Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs10714851 chr3:39072587 AG/A 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs10735395 chr12:104737231 T/C 9.67E-13 177 1.37 15.8 15.48 KM Plot
PAAD rs10745346 chr1:114859025 A/G 0 176 0.4 15.63 15.53 KM Plot
PAAD rs10745995 chr12:104657900 A/G 6.39E-13 178 15.53 15.08 1.37 KM Plot
PAAD rs10745996 chr12:104657964 C/T 5.36E-13 178 15.55 14.6 1.37 KM Plot
PAAD rs10752586 chr1:36614713 C/G 8.54E-5 178 19.47 12.2 16.27 KM Plot
PAAD rs10773775 chr12:130877879 A/G 0.000137 172 5.87 16.07 15.43 KM Plot
PAAD rs10778319 chr12:104685052 T/C 6.07E-13 172 2.63 17.23 15.33 KM Plot
PAAD rs10801736 chr1:89877573 C/T 5.81E-6 178 15.57 15.33 4.47 KM Plot
PAAD rs10839355 chr11:49764142 G/A 2.45E-5 174 15.4 15.43 0.4 KM Plot
PAAD rs10839357 chr11:49769993 A/G 1.62E-5 178 0.4 15.77 15.4 KM Plot
PAAD rs10839373 chr11:49802697 C/G 2.22E-5 175 15.4 15.72 0.4 KM Plot
PAAD rs10839374 chr11:49802707 T/C 2.22E-5 175 15.4 15.72 0.4 KM Plot
PAAD rs10839376 chr11:49802835 T/A 2.1E-5 176 15.4 15.77 0.4 KM Plot
PAAD rs10858043 chr1:114846210 G/T 0 174 0.4 15.27 15.57 KM Plot